PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC10958_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 449aa    MW: 49063.4 Da    PI: 6.3072
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC10958_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.52.8e-09258305455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  RrC10958_p1 258 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 305
                  8*************************9....677*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.23E-17252323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.82E-10252309No hitNo description
Gene3DG3DSA:4.10.280.107.4E-17254322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.663254304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-6258305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-10260310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MDNELFMNVS EMTSLSSSSP AMLNWASSME THPLEQSVIT RNVPRDCFFW EKSTEQSVIG  60
SAPTSHVSPP SVSNFSGGGG GAGENHVIRE LIGNLGNIGD IYGAPASIIG NSSGSLYAAP  120
TMSSSPPLDA FSGDSRFAER AARFSCFNGR GTTNGPVAET ASINGELTRV SSTSALKPPT  180
GESSGESSRK RKGKSKENSH SSTVTPSHNL PKEVEEKEDS DSKRSRKSKE NGGEDTKSID  240
PYKDFIHVRA RRGQATDSHS LAERVRREKI SERMKLLQDL VPGCNKVTGK ALMLDEIINY  300
VQSLQRQVEF LSMKLSSVNT RLDFNMDALM SKDIFPSSNN QQVLQLESSS DILLADHHSH  360
TLQLNPNDPS INIMNPMETS ESRSFNSQLP TLTHFTDSIS QFSTFSEDDL HSIIHMGFAQ  420
NHIRELNPVH STSFQGPSNQ VPSHMKAEL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4885950.0AF488595.1 Arabidopsis thaliana clone bHLH062 putative bHLH transcription factor mRNA, complete cds.
GenBankAK1753690.0AK175369.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor (bHLH062), complete cds, clone: RAFL21-80-E17.
GenBankAK1754960.0AK175496.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor (bHLH062), complete cds, clone: RAFL21-92-E09.
GenBankBT0264970.0BT026497.1 Arabidopsis thaliana At3g07340 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013638496.10.0PREDICTED: transcription factor bHLH62
SwissprotQ9SRT20.0BH062_ARATH; Transcription factor bHLH62
TrEMBLA0A078GRM20.0A0A078GRM2_BRANA; BnaC05g44630D protein
STRINGBra029640.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23322775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.11e-167bHLH family protein